Transcript: lnc-NKX6-1-1:1

Basic information

LNCipedia transcript ID: lnc-NKX6-1-1:1 
LNCipedia gene ID: lnc-NKX6-1-1
Ensembl Gene ID: ENSG00000248749
Ensembl Transcript ID: ENST00000504840
Location (hg38): chr4:84371393-84380189
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504840; TCONS_00007790; ENST00000504840.1; RP11-42A4.1-001; OTTHUMT00000362848.1; NONHSAT097238
Alternative gene names: ENSG00000248749; XLOC_004004; linc-FAM175A-2; RP11-42A4.1; ENSG00000248749.1; OTTHUMG00000160894.1; AC104063.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0997 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX6-1-1:1
3.1 lnc-NKX6-1-1:1
4.0 lnc-NKX6-1-1:1
4.1 lnc-NKX6-1-1:1
5.0 lnc-NKX6-1-1:1
5.1 lnc-LIN54-18:1
5.2 lnc-NKX6-1-1:1