Transcript: lnc-NKX6-1-2:1

Basic information

LNCipedia transcript ID: lnc-NKX6-1-2:1 
LNCipedia gene ID: lnc-NKX6-1-2
Ensembl Gene ID: ENSG00000250546
Ensembl Transcript ID: ENST00000508406
Location (hg38): chr4:83968082-84293412
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2795 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508406; ENST00000508406.1; RP11-8L2.1-001; OTTHUMT00000363143.1; NONHSAT097235
Alternative gene names: ENSG00000250546; RP11-8L2.1; ENSG00000250546.1; OTTHUMG00000160961.1; ENSG00000250546.5; AC079160.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.8619 non-coding 
CPAT coding probability 6.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX6-1-2:1
3.1 lnc-NKX6-1-2:1
4.0 lnc-NKX6-1-2:1
4.1 lnc-NKX6-1-2:1
5.0 lnc-NKX6-1-2:1
5.1 lnc-LIN54-17:2
5.2 lnc-NKX6-1-2:1