Transcript: lnc-NKX6-1-2:5

Basic information

LNCipedia transcript ID: lnc-NKX6-1-2:5 
LNCipedia gene ID: lnc-NKX6-1-2
RefSeq ID: NR_125909
Location (hg38): chr4:83968082-84299169
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2838 bp
Exons: 9
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125909; NR_125909.1
Alternative gene names: LOC101928978


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.8619 non-coding 
CPAT coding probability 6.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX6-1-2:5
4.0 lnc-NKX6-1-2:5
4.1 lnc-NKX6-1-2:5
5.0 lnc-NKX6-1-2:5
5.1 lnc-LIN54-17:1
5.2 lnc-NKX6-1-2:5