Transcript: lnc-NKX6-1-5:4

Basic information

LNCipedia transcript ID: lnc-NKX6-1-5:4 
LNCipedia gene ID: lnc-NKX6-1-5
Location (hg38): chr4:84538021-84583515
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 901 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000073012.1|HBMT00001086834.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -57.8349 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-1-5:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NKX6-1-5:4
5.0 lnc-NKX6-1-5:4
5.1 lnc-LIN54-22:2
5.2 lnc-NKX6-1-5:4