Transcript: lnc-NKX6-3-4:1

Basic information

LNCipedia transcript ID: lnc-NKX6-3-4:1 
LNCipedia gene ID: lnc-NKX6-3-4
Location (hg38): chr8:41533044-41578421
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1109 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253133.1|MICT00000342854.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.8042 non-coding 
CPAT coding probability 4.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-360L9.4.1-1:3
5.0 lnc-RP11-360L9.4.1-1:3
5.1 lnc-SFRP1-6:1
5.2 lnc-NKX6-3-4:1