Transcript: lnc-NKX6-3-4:4

Basic information

LNCipedia transcript ID: lnc-NKX6-3-4:4 
LNCipedia gene ID: lnc-NKX6-3-4
RefSeq ID: NR_125824
Location (hg38): chr8:41534305-41578368
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125824; NR_125824.1
Alternative gene names: LOC102723729


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.0668 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-3-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-360L9.4.1-1:2
4.0 lnc-RP11-360L9.4.1-1:2
4.1 lnc-RP11-360L9.4.1-1:2
5.0 lnc-RP11-360L9.4.1-1:2
5.1 lnc-SFRP1-6:4
5.2 lnc-NKX6-3-4:4