Transcript: lnc-NKX6-3-5:1

Basic information

LNCipedia transcript ID: lnc-NKX6-3-5:1 
LNCipedia gene ID: lnc-NKX6-3-5
Ensembl Gene ID: ENSG00000253509
Ensembl Transcript ID: ENST00000517495
Location (hg38): chr8:41275115-41277003
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 255 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517495.1; CTD-3080F16.3-001; OTTHUMT00000377135.2; NONHSAT126219
Alternative gene names: ENSG00000253509.1; CTD-3080F16.3; OTTHUMG00000164075.2; AC104393.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.5941 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-3-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-3080F16.3.1-1:1
4.0 lnc-CTD-3080F16.3.1-1:1
4.1 lnc-CTD-3080F16.3.1-1:1
5.0 lnc-CTD-3080F16.3.1-1:1
5.1 lnc-C8orf86-64:1
5.2 lnc-NKX6-3-5:1