Transcript: lnc-NLRC4-3:1

Basic information

LNCipedia transcript ID: lnc-NLRC4-3:1 
LNCipedia gene ID: lnc-NLRC4-3
Ensembl Gene ID: ENSG00000272716
Ensembl Transcript ID: ENST00000608489
Location (hg38): chr2:32165046-32165757
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 712 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608489.1
Alternative gene names: ENSG00000272716.1; RP11-563N4.1; AL121658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.2534 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NLRC4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRC4-3:1
4.0 lnc-NLRC4-3:1
4.1 lnc-NLRC4-3:1
5.0 lnc-NLRC4-3:1
5.1 lnc-RBKS-80:1
5.2 lnc-NLRC4-3:1