Transcript: lnc-NLRC4-5:2

Basic information

LNCipedia transcript ID: lnc-NLRC4-5:2 
LNCipedia gene ID: lnc-NLRC4-5
RefSeq ID: NR_125793
Location (hg38): chr2:32557520-32574818
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000623382.1; NR_125793.1
Alternative gene names: ENSG00000279897.1; BIRC6-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.0264 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NLRC4-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NLRC4-5:2
4.1 lnc-NLRC4-5:2
5.0 lnc-NLRC4-5:2
5.1 lnc-RBKS-84:2
5.2 lnc-NLRC4-5:2