Transcript: lnc-NLRP12-1:5

Basic information

LNCipedia transcript ID: lnc-NLRP12-1:5 
LNCipedia gene ID: lnc-NLRP12-1
Location (hg38): chr19:53874626-53876049
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 423 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413496.1; AC008440.5-001; OTTHUMT00000134433.1; NONHSAT067848
Alternative gene names: ENSG00000232220.1; AC008440.5; OTTHUMG00000060830.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2003 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NLRP12-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRP12-2:1
4.0 lnc-NLRP12-2:1
4.1 lnc-NLRP12-1:5
5.0 lnc-NLRP12-1:5
5.1 lnc-TMC4-25:1
5.2 lnc-NLRP12-1:5