Transcript: lnc-NME1-2:1

Basic information

LNCipedia transcript ID: lnc-NME1-2:1 
LNCipedia gene ID: lnc-NME1-2
Ensembl Gene ID: ENSG00000249870
Ensembl Transcript ID: ENST00000509833
Location (hg38): chr17:51042524-51085471
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 332 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509833.1; RP11-481C4.1-001; OTTHUMT00000368610.1; NONHSAT054744
Alternative gene names: ENSG00000249870.1; RP11-481C4.1; OTTHUMG00000162349.1; AC005920.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0385 non-coding 
CPAT coding probability 7.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NME1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NME1-1:1
4.0 lnc-NME1-2:1
4.1 lnc-NME1-2:1
5.0 lnc-NME1-2:1
5.1 lnc-EPN3-16:1
5.2 lnc-NME1-2:1