Transcript: lnc-NME3-2:1

Basic information

LNCipedia transcript ID: lnc-NME3-2:1 
LNCipedia gene ID: lnc-NME3-2
Ensembl Gene ID: ENSG00000261399
Ensembl Transcript ID: ENST00000570022
Location (hg38): chr16:1713527-1714208
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 468 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570022.1; LA16c-329F2.1-001; OTTHUMT00000433182.1
Alternative gene names: ENSG00000261399.1; LA16c-329F2.1; OTTHUMG00000176703.1; AL031710.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2891 non-coding 
CPAT coding probability 17.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NME3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NME3-2:1
4.0 lnc-NME3-2:1
4.1 lnc-NME3-2:1
5.0 lnc-NME3-2:1
5.1 lnc-PKMYT1-80:2
5.2 lnc-NME3-2:1