Transcript: lnc-NNT-4:1

Basic information

LNCipedia transcript ID: lnc-NNT-4:1 
LNCipedia gene ID: lnc-NNT-4
Ensembl Gene ID: ENSG00000249276
Ensembl Transcript ID: ENST00000508829
Location (hg38): chr5:43874367-43886628
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009393; ENST00000508829; ENST00000508829.1; RP11-8L21.1-001; OTTHUMT00000368021.1; NONHSAT101329
Alternative gene names: XLOC_004371; linc-MRPS30-3; ENSG00000249276; RP11-8L21.1; ENSG00000249276.1; OTTHUMG00000162230.1; AC104119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -452.5302 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NNT-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NNT-1:1
3.1 lnc-NNT-4:1
4.0 lnc-NNT-4:1
4.1 lnc-NNT-4:1
5.0 lnc-NNT-4:1
5.1 lnc-CARD6-56:1
5.2 lnc-NNT-4:1