Transcript: lnc-NOMO3-1:1

Basic information

LNCipedia transcript ID: lnc-NOMO3-1:1 
LNCipedia gene ID: lnc-NOMO3-1
Location (hg38): chr16:16300150-16300826
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 677 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000547549.1; MIR3179-2-001; OTTHUMT00000409529.1; NONHSAT140786
Alternative gene names: ENSG00000257381.1; MIR3179-2; OTTHUMG00000170526.1; ENSG00000257381.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.415 non-coding 
CPAT coding probability 7.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOMO3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOMO3-1:1
4.0 lnc-NOMO3-1:1
4.1 lnc-NOMO3-1:1
5.0 lnc-NOMO3-1:1
5.1 lnc-MPV17L-18:1
5.2 lnc-NOMO3-1:1