Transcript: lnc-NOTUM-1:1

Basic information

LNCipedia transcript ID: lnc-NOTUM-1:1 
LNCipedia gene ID: lnc-NOTUM-1
Ensembl Gene ID: ENSG00000264735
Ensembl Transcript ID: ENST00000580125
Location (hg38): chr17:81965632-81966589
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 958 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580125.1; RP11-498C9.17-001; OTTHUMT00000442384.1; NONHSAT056606
Alternative gene names: ENSG00000264735.1; RP11-498C9.17; OTTHUMG00000178531.1; AC145207.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.0848 non-coding 
CPAT coding probability 61.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NOTUM-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOTUM-1:1
4.0 lnc-NOTUM-1:1
4.1 lnc-NOTUM-1:1
5.0 lnc-NOTUM-1:1
5.1 lnc-PPP1R27-14:1
5.2 lnc-NOTUM-1:1