Transcript: lnc-NOX3-1:1

Basic information

LNCipedia transcript ID: lnc-NOX3-1:1 
LNCipedia gene ID: lnc-NOX3-1
Ensembl Gene ID: ENSG00000232529
Ensembl Transcript ID: ENST00000453579
Location (hg38): chr6:155380511-155381183
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011599; ENST00000453579; ENST00000453579.1; RP1-257I9.2-001; OTTHUMT00000042820.1; NONHSAT115673
Alternative gene names: XLOC_005887; linc-TFB1M; ENSG00000232529; RP1-257I9.2; ENSG00000232529.1; OTTHUMG00000015884.1; AL031773.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.7589 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOX3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOX3-1:1
3.1 lnc-NOX3-1:1
4.0 lnc-NOX3-1:1
4.1 lnc-NOX3-1:1
5.0 lnc-NOX3-1:1
5.1 lnc-SYNE1-26:1
5.2 lnc-NOX3-1:1