Transcript: lnc-NOXO1-1:2

Basic information

LNCipedia transcript ID: lnc-NOXO1-1:2 
LNCipedia gene ID: lnc-NOXO1-1
Ensembl Gene ID: ENSG00000261790
Ensembl Transcript ID: ENST00000564438
Location (hg38): chr16:1984877-1986853
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 614 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564438.1; AC005606.14-001; OTTHUMT00000434247.1; NONHSAT052037
Alternative gene names: ENSG00000261790.1; AC005606.14; OTTHUMG00000176897.1; AC005606.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.7492 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOXO1-1:2 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOXO1-1:2
4.0 lnc-NOXO1-1:2
4.1 lnc-NOXO1-1:2
5.0 lnc-NOXO1-1:2
5.1 lnc-PKMYT1-64:2
5.2 lnc-NOXO1-1:2