Transcript: lnc-NPAP1-11:2

Basic information

LNCipedia transcript ID: lnc-NPAP1-11:2 
LNCipedia gene ID: lnc-NPAP1-11
Location (hg38): chr15:24170034-24180944
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023857; NONHSAT040876
Alternative gene names: XLOC_011172; linc-C15orf2-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.1343 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-11:2
3.1 lnc-C15orf2-11:2
4.0 lnc-C15orf2-11:2
4.1 lnc-C15orf2-11:2
5.0 lnc-C15orf2-11:2
5.1 lnc-SNRPN-18:2
5.2 lnc-NPAP1-11:2