Transcript: lnc-NPAP1-6:4

Basic information

LNCipedia transcript ID: lnc-NPAP1-6:4 
LNCipedia gene ID: lnc-NPAP1-6
Location (hg38): chr15:24385549-24393655
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023869; NONHSAT040902
Alternative gene names: XLOC_011178; linc-C15orf2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.1316 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-5:4
3.1 lnc-C15orf2-6:4
4.0 lnc-C15orf2-6:4
4.1 lnc-C15orf2-6:4
5.0 lnc-C15orf2-6:4
5.1 lnc-SNRPN-7:4
5.2 lnc-NPAP1-6:4