Transcript: lnc-NPAP1-9:11

Basic information

LNCipedia transcript ID: lnc-NPAP1-9:11 
LNCipedia gene ID: lnc-NPAP1-9
Ensembl Gene ID: ENSG00000261621
Ensembl Transcript ID: ENST00000566676
Location (hg38): chr15:24261279-24276829
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566676.1; RP11-580I1.2-002; OTTHUMT00000431875.1; NONHSAT040890
Alternative gene names: ENSG00000261621.1; RP11-580I1.2; OTTHUMG00000176384.1; AC087463.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.4422 non-coding 
CPAT coding probability 7.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-9:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf2-9:11
4.0 lnc-C15orf2-9:11
4.1 lnc-C15orf2-9:11
5.0 lnc-C15orf2-9:11
5.1 lnc-SNRPN-16:11
5.2 lnc-NPAP1-9:11