Transcript: lnc-NPAP1-9:8

Basic information

LNCipedia transcript ID: lnc-NPAP1-9:8 
LNCipedia gene ID: lnc-NPAP1-9
Location (hg38): chr15:24257080-24278352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00023863
Alternative gene names: XLOC_011174; linc-C15orf2-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5731 non-coding 
CPAT coding probability 12.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-9:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-9:6
3.1 lnc-C15orf2-9:8
4.0 lnc-C15orf2-9:8
4.1 lnc-C15orf2-9:8
5.0 lnc-C15orf2-9:8
5.1 lnc-SNRPN-16:8
5.2 lnc-NPAP1-9:8