Transcript: lnc-NPBWR1-12:13

Basic information

LNCipedia transcript ID: lnc-NPBWR1-12:13 
LNCipedia gene ID: lnc-NPBWR1-12
Ensembl Gene ID: ENSG00000228801
Ensembl Transcript ID: ENST00000520357
Location (hg38): chr8:51899715-51913138
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520357.1; RP11-110G21.1-004; OTTHUMT00000378008.1; NONHSAT126542
Alternative gene names: ENSG00000228801.4; RP11-110G21.1; OTTHUMG00000164247.2; ENSG00000228801.5; AC064807.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.0304 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-12:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090186.1-1:4
4.0 lnc-AC090186.1-1:4
4.1 lnc-AC090186.1-1:4
5.0 lnc-AC090186.1-1:4
5.1 lnc-SDCBP-91:13
5.2 lnc-NPBWR1-12:13