Transcript: lnc-NPBWR1-12:16

Basic information

LNCipedia transcript ID: lnc-NPBWR1-12:16 
LNCipedia gene ID: lnc-NPBWR1-12
Ensembl Gene ID: ENSG00000272024
Ensembl Transcript ID: ENST00000607201
Location (hg38): chr8:51950284-51950690
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607201.1
Alternative gene names: ENSG00000272024.1; RP11-546K22.3; AC064807.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.3913 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-12:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090186.1-7:1
4.0 lnc-AC090186.1-7:1
4.1 lnc-AC090186.1-1:16
5.0 lnc-AC090186.1-1:16
5.1 lnc-SDCBP-91:16
5.2 lnc-NPBWR1-12:16