Transcript: lnc-NPBWR1-12:9

Basic information

LNCipedia transcript ID: lnc-NPBWR1-12:9 
LNCipedia gene ID: lnc-NPBWR1-12
Location (hg38): chr8:51899649-51947173
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 935 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000535440.1; RP11-110G21.1-201
Alternative gene names: ENSG00000228801.4; RP11-110G21.1; OTTHUMG00000164247.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0642 non-coding 
CPAT coding probability 19.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-12:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090186.1-1:2
4.0 lnc-AC090186.1-1:2
4.1 lnc-AC090186.1-1:2
5.0 lnc-AC090186.1-1:2
5.1 lnc-SDCBP-91:9
5.2 lnc-NPBWR1-12:9