Transcript: lnc-NPBWR1-4:2

Basic information

LNCipedia transcript ID: lnc-NPBWR1-4:2 
LNCipedia gene ID: lnc-NPBWR1-4
Ensembl Gene ID: ENSG00000253551
Ensembl Transcript ID: ENST00000522541
Location (hg38): chr8:52194362-52199580
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 824 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522541.1; RP11-26M5.2-001; OTTHUMT00000377942.1; NONHSAT126554
Alternative gene names: ENSG00000253551.1; RP11-26M5.2; OTTHUMG00000164251.1; AC021915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.0949 non-coding 
CPAT coding probability 8.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090186.1-4:1
4.0 lnc-AC090186.1-4:1
4.1 lnc-AC090186.1-4:1
5.0 lnc-AC090186.1-4:1
5.1 lnc-SDCBP-87:1
5.2 lnc-NPBWR1-4:2