Transcript: lnc-NPBWR2-1:1

Basic information

LNCipedia transcript ID: lnc-NPBWR2-1:1 
LNCipedia gene ID: lnc-NPBWR2-1
Location (hg38): chr20:64140028-64143587
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 334 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028474; NONHSAT081032
Alternative gene names: XLOC_013850; linc-NPBWR2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.7648 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPBWR2-1:1
3.1 lnc-NPBWR2-1:1
4.0 lnc-NPBWR2-1:1
4.1 lnc-NPBWR2-1:1
5.0 lnc-NPBWR2-1:1
5.1 lnc-SPATA2-211:1
5.2 lnc-NPBWR2-1:1