Transcript: lnc-NPC1-1:1

Basic information

LNCipedia transcript ID: lnc-NPC1-1:1 
LNCipedia gene ID: lnc-NPC1-1
Ensembl Gene ID: ENSG00000266495
Ensembl Transcript ID: ENST00000585184
Location (hg38): chr18:23257164-23260354
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 389 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585184.1; RP11-17J14.2-001; OTTHUMT00000445289.1; NONHSAT058658
Alternative gene names: ENSG00000266495.1; RP11-17J14.2; OTTHUMG00000179210.1; AC011731.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 121.4017 coding 
CPAT coding probability 20.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NPC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPC1-1:1
4.0 lnc-NPC1-1:1
4.1 lnc-NPC1-1:1
5.0 lnc-NPC1-1:1
5.1 lnc-SMAD2-188:1
5.2 lnc-NPC1-1:1