Transcript: lnc-NPHP4-63:2

Basic information

LNCipedia transcript ID: lnc-NPHP4-63:2 
LNCipedia gene ID: lnc-NPHP4-63
Ensembl Gene ID: ENSG00000284692
Ensembl Transcript ID: ENST00000641426
Location (hg38): chr1:5478736-5492889
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 679 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641426.1
Alternative gene names: ENSG00000284692.1; Z98259.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.776 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPHP4-63:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CLSTN1-63:2
5.1 lnc-CLSTN1-63:2
5.2 lnc-NPHP4-63:2