Transcript: lnc-NPHP4-69:1

Basic information

LNCipedia transcript ID: lnc-NPHP4-69:1 
LNCipedia gene ID: lnc-NPHP4-69
Ensembl Gene ID: ENSG00000284739
Ensembl Transcript ID: ENST00000641254
Location (hg38): chr1:4963954-4973298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641254.1
Alternative gene names: ENSG00000284739.1; BX005132.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -225.0933 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPHP4-69:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CLSTN1-69:1
5.1 lnc-CLSTN1-69:1
5.2 lnc-NPHP4-69:1