Transcript: lnc-NPIPA1-1:1

Basic information

LNCipedia transcript ID: lnc-NPIPA1-1:1 
LNCipedia gene ID: lnc-NPIPA1-1
RefSeq ID: NR_125434
Location (hg38): chr16:15094411-15109197
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2598 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000569858.1; RP11-72I8.1-001; OTTHUMT00000422449.1; NONHSAT140736; NR_125434; NR_125434.1
Alternative gene names: ENSG00000260735.1; RP11-72I8.1; OTTHUMG00000173204.1; AC139256.1; LOC100505915


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4055 non-coding 
CPAT coding probability 12.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPA1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPIP-1:1
4.0 lnc-NPIP-1:1
4.1 lnc-NPIP-1:1
5.0 lnc-NPIP-1:1
5.1 lnc-MPV17L-8:1
5.2 lnc-NPIPA1-1:1