Transcript: lnc-NPIPA7-2:1

Basic information

LNCipedia transcript ID: lnc-NPIPA7-2:1 
LNCipedia gene ID: lnc-NPIPA7-2
Ensembl Gene ID: ENSG00000260126
Ensembl Transcript ID: ENST00000567465
Location (hg38): chr16:16658227-16664135
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567465.1; RP11-14N9.2-001; OTTHUMT00000436080.1; NONHSAT140801
Alternative gene names: ENSG00000260126.1; RP11-14N9.2; OTTHUMG00000177276.1; AC092326.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4111 non-coding 
CPAT coding probability 3.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPA7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-467M13.1.1-2:1
4.0 lnc-RP11-467M13.1.1-2:1
4.1 lnc-RP11-467M13.1.1-2:1
5.0 lnc-RP11-467M13.1.1-2:1
5.1 lnc-MPV17L-24:1
5.2 lnc-NPIPA7-2:1