Transcript: lnc-NPIPA8-6:1

Basic information

LNCipedia transcript ID: lnc-NPIPA8-6:1 
LNCipedia gene ID: lnc-NPIPA8-6
Ensembl Gene ID: ENSG00000260242
Ensembl Transcript ID: ENST00000563866
Location (hg38): chr16:18002806-18173063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563866.1; CTA-481E9.3-001; OTTHUMT00000436058.1; NONHSAT140827
Alternative gene names: ENSG00000260242.1; CTA-481E9.3; OTTHUMG00000177259.1; AC091489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.3007 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPA8-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1212A22.2.1-1:1
4.0 lnc-RP11-1212A22.2.1-1:1
4.1 lnc-RP11-1212A22.2.1-1:1
5.0 lnc-RP11-1212A22.2.1-1:1
5.1 lnc-MARF1-30:1
5.2 lnc-NPIPA8-6:1