Transcript: lnc-NPIPB11-1:1

Basic information

LNCipedia transcript ID: lnc-NPIPB11-1:1 
LNCipedia gene ID: lnc-NPIPB11-1
Ensembl Gene ID: ENSG00000260953
Ensembl Transcript ID: ENST00000567984
Location (hg38): chr16:29262273-29264479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567984.1; RP11-426C22.6-001; OTTHUMT00000433249.1; NONHSAT141594
Alternative gene names: ENSG00000260953.1; RP11-426C22.6; OTTHUMG00000176713.1; AC009093.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.1435 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPB11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-231C14.2.1-1:1
4.0 lnc-RP11-231C14.2.1-1:1
4.1 lnc-RP11-231C14.2.1-1:1
5.0 lnc-RP11-231C14.2.1-1:1
5.1 lnc-SULT1A2-30:1
5.2 lnc-NPIPB11-1:1