Transcript: lnc-NPIPB2-5:1

Basic information

LNCipedia transcript ID: lnc-NPIPB2-5:1 
LNCipedia gene ID: lnc-NPIPB2-5
Ensembl Gene ID: ENSG00000175604
Ensembl Transcript ID: ENST00000312019
Location (hg38): chr16:12086746-12090302
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1974 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000312019.2
Alternative gene names: ENSG00000175604.2; RP11-276H1.3; AC007601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.2429 non-coding 
CPAT coding probability 85.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NPIPB2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-276H1.3.1-4:1
4.1 lnc-RP11-276H1.3.1-4:1
5.0 lnc-RP11-276H1.3.1-4:1
5.1 lnc-PARN-37:1
5.2 lnc-NPIPB2-5:1