Transcript: lnc-NPPC-1:1

Basic information

LNCipedia transcript ID: lnc-NPPC-1:1 
LNCipedia gene ID: lnc-NPPC-1
Ensembl Gene ID: ENSG00000227033
Ensembl Transcript ID: ENST00000413841
Location (hg38): chr2:231978488-232015720
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 391 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413841.1; AC105461.1-001; OTTHUMT00000330973.1; NONHSAT077398
Alternative gene names: ENSG00000227033.1; AC105461.1; OTTHUMG00000153384.1; AC019130.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 78.2425 coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NPPC-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPPC-1:1
4.0 lnc-NPPC-1:1
4.1 lnc-NPPC-1:1
5.0 lnc-NPPC-1:1
5.1 lnc-NCL-14:1
5.2 lnc-NPPC-1:1