Transcript: lnc-NPTX1-2:4

Basic information

LNCipedia transcript ID: lnc-NPTX1-2:4 
LNCipedia gene ID: lnc-NPTX1-2
Location (hg38): chr17:80351831-80415168
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3698 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT056371; NR_029376
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5226 non-coding 
CPAT coding probability 91.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NPTX1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPTX1-2:4
4.0 lnc-NPTX1-2:4
4.1 lnc-NPTX1-2:4
5.0 lnc-NPTX1-2:4
5.1 lnc-SGSH-9:5
5.2 lnc-NPTX1-2:4