Transcript: lnc-NPTX1-2:5

Basic information

LNCipedia transcript ID: lnc-NPTX1-2:5 
LNCipedia gene ID: lnc-NPTX1-2
Ensembl Gene ID: ENSG00000263069
Ensembl Transcript ID: ENST00000613190
Location (hg38): chr17:80351837-80353811
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1975 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613190.1
Alternative gene names: ENSG00000263069.5; CTD-2047H16.4; AC124319.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.5226 non-coding 
CPAT coding probability 51.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NPTX1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NPTX1-2:5
4.1 lnc-NPTX1-2:5
5.0 lnc-NPTX1-2:5
5.1 lnc-SGSH-9:12
5.2 lnc-NPTX1-2:5