Transcript: lnc-NPY5R-3:1

Basic information

LNCipedia transcript ID: lnc-NPY5R-3:1 
LNCipedia gene ID: lnc-NPY5R-3
Ensembl Gene ID: ENSG00000249419
Ensembl Transcript ID: ENST00000513093
Location (hg38): chr4:162022733-162047567
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1105 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513093.1; RP11-497K21.1-001; OTTHUMT00000364864.1; NONHSAT099039
Alternative gene names: ENSG00000249419.1; RP11-497K21.1; OTTHUMG00000161416.1; AC023136.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.3786 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPY5R-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPY5R-3:1
4.0 lnc-NPY5R-3:1
4.1 lnc-NPY5R-3:1
5.0 lnc-NPY5R-3:1
5.1 lnc-TMEM144-23:1
5.2 lnc-NPY5R-3:1