Transcript: lnc-NR2E3-3:1

Basic information

LNCipedia transcript ID: lnc-NR2E3-3:1 
LNCipedia gene ID: lnc-NR2E3-3
Ensembl Gene ID: ENSG00000260037
Ensembl Transcript ID: ENST00000562658
Location (hg38): chr15:71818396-71823336
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 353 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562658.1; CTD-2524L6.3-003; OTTHUMT00000420825.1; NONHSAT047048; ENST00000562658.5
Alternative gene names: ENSG00000260037.1; CTD-2524L6.3; OTTHUMG00000172843.1; ENSG00000260037.5; AC104938.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4919 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR2E3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THSD4-4:1
4.0 lnc-THSD4-4:1
4.1 lnc-THSD4-3:16
5.0 lnc-THSD4-3:16
5.1 lnc-ARIH1-11:1
5.2 lnc-NR2E3-3:1