Transcript: lnc-NR2E3-3:3

Basic information

LNCipedia transcript ID: lnc-NR2E3-3:3 
LNCipedia gene ID: lnc-NR2E3-3
Ensembl Gene ID: ENSG00000260037
Ensembl Transcript ID: ENST00000561834
Location (hg38): chr15:71818490-71823384
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 546 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561834.1; CTD-2524L6.3-001; OTTHUMT00000420827.1; NONHSAT047050
Alternative gene names: ENSG00000260037.1; CTD-2524L6.3; OTTHUMG00000172843.1; ENSG00000260037.5; AC104938.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4919 non-coding 
CPAT coding probability 5.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR2E3-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THSD4-4:3
4.0 lnc-THSD4-4:3
4.1 lnc-THSD4-3:18
5.0 lnc-THSD4-3:18
5.1 lnc-ARIH1-11:3
5.2 lnc-NR2E3-3:3