Transcript: lnc-NR5A2-1:8

Basic information

LNCipedia transcript ID: lnc-NR5A2-1:8 
LNCipedia gene ID: lnc-NR5A2-1
Ensembl Gene ID: ENSG00000230623
Ensembl Transcript ID: ENST00000637430
Location (hg38): chr1:200333193-200478022
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 817 bp
Exons: 6
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637430.1
Alternative gene names: ENSG00000230623.4; RP11-469A15.2; AC104461.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.6671 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR5A2-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NR5A2-1:8
5.0 lnc-NR5A2-1:8
5.1 lnc-ADORA1-75:1
5.2 lnc-NR5A2-1:8