Transcript: lnc-NRGN-1:2

Basic information

LNCipedia transcript ID: lnc-NRGN-1:2 
LNCipedia gene ID: lnc-NRGN-1
Ensembl Gene ID: ENSG00000250073
Ensembl Transcript ID: ENST00000532579
Location (hg38): chr11:124762431-124765361
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532579; ENST00000532579.1; RP11-677M14.3-002; OTTHUMT00000387082.1; NONHSAT024897
Alternative gene names: ENSG00000250073; RP11-677M14.3; ENSG00000250073.2; OTTHUMG00000165930.1; AP000866.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.9182 non-coding 
CPAT coding probability 7.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRGN-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRGN-1:2
3.1 lnc-NRGN-1:2
4.0 lnc-NRGN-1:2
4.1 lnc-NRGN-1:2
5.0 lnc-NRGN-1:2
5.1 lnc-HINFP-74:10
5.2 lnc-NRGN-1:2