Transcript: lnc-NRIP1-2:1

Basic information

LNCipedia transcript ID: lnc-NRIP1-2:1 
LNCipedia gene ID: lnc-NRIP1-2
Ensembl Gene ID: ENSG00000229425
Ensembl Transcript ID: ENST00000449602
Location (hg38): chr21:15370522-15402305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1000 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449602; ENST00000449602.1; AJ006998.2-001; OTTHUMT00000157937.1; NONHSAT081200
Alternative gene names: ENSG00000229425; AJ006998.2; ENSG00000229425.1; OTTHUMG00000074333.1; ENSG00000229425.2; AJ009632.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.8763 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRIP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRIP1-1:1
3.1 lnc-NRIP1-2:1
4.0 lnc-NRIP1-2:1
4.1 lnc-NRIP1-2:1
5.0 lnc-NRIP1-2:1
5.1 lnc-N6AMT1-103:16
5.2 lnc-NRIP1-2:1