Transcript: lnc-NRTN-2:1

Basic information

LNCipedia transcript ID: lnc-NRTN-2:1 
LNCipedia gene ID: lnc-NRTN-2
Ensembl Gene ID: ENSG00000267709
Ensembl Transcript ID: ENST00000589276
RefSeq ID: NR_110740
Location (hg38): chr19:5847467-5858239
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1188 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060717; ENST00000589276.1; NR_110740; NR_110740.1
Alternative gene names: ENSG00000267709.1; AC024592.9; AC024592.2; LOC101928844


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.0227 non-coding 
CPAT coding probability 7.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRTN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRTN-2:1
4.0 lnc-NRTN-2:1
4.1 lnc-NRTN-2:1
5.0 lnc-NRTN-2:1
5.1 lnc-RPL36-6:1
5.2 lnc-NRTN-2:1