Transcript: lnc-NSG2-1:1

Basic information

LNCipedia transcript ID: lnc-NSG2-1:1 
LNCipedia gene ID: lnc-NSG2-1
Ensembl Gene ID: ENSG00000249722
Ensembl Transcript ID: ENST00000503317
Location (hg38): chr5:174329612-174330503
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009542; ENST00000503317; ENST00000503317.1; CTC-430J12.2-001; OTTHUMT00000371772.1; NONHSAT105236
Alternative gene names: XLOC_004646; linc-MSX2-4; ENSG00000249722; CTC-430J12.2; ENSG00000249722.1; OTTHUMG00000163124.1; AC025752.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5462 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSG2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMP19.1-1:1
3.1 lnc-HMP19.1-1:1
4.0 lnc-HMP19.1-1:1
4.1 lnc-HMP19.1-1:1
5.0 lnc-HMP19.1-1:1
5.1 lnc-ATP6V0E1-45:1
5.2 lnc-NSG2-1:1