Transcript: lnc-NSMCE1-1:1

Basic information

LNCipedia transcript ID: lnc-NSMCE1-1:1 
LNCipedia gene ID: lnc-NSMCE1-1
Location (hg38): chr16:27213310-27214993
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1684 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567108.1; CTD-3203P2.1-001; OTTHUMT00000434972.1; NONHSAT141432
Alternative gene names: ENSG00000259940.1; CTD-3203P2.1; OTTHUMG00000177038.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0559 non-coding 
CPAT coding probability 27.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSMCE1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSMCE1-1:1
4.0 lnc-NSMCE1-1:1
4.1 lnc-NSMCE1-1:1
5.0 lnc-NSMCE1-1:1
5.1 lnc-SULT1A2-58:1
5.2 lnc-NSMCE1-1:1