Transcript: lnc-NSMCE3-1:1

Basic information

LNCipedia transcript ID: lnc-NSMCE3-1:1 
LNCipedia gene ID: lnc-NSMCE3-1
Ensembl Gene ID: ENSG00000259690
Ensembl Transcript ID: ENST00000558671
Location (hg38): chr15:29373602-29376956
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3355 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558671.1; CTD-3118D7.1-001; OTTHUMT00000417259.1; NONHSAT041292
Alternative gene names: ENSG00000259690.1; CTD-3118D7.1; OTTHUMG00000172187.1; AC107980.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9991 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSMCE3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDNL2-1:1
4.0 lnc-NDNL2-1:1
4.1 lnc-NDNL2-1:1
5.0 lnc-NDNL2-1:1
5.1 lnc-OTUD7A-49:1
5.2 lnc-NSMCE3-1:1