Transcript: lnc-NSUN6-2:4

Basic information

LNCipedia transcript ID: lnc-NSUN6-2:4 
LNCipedia gene ID: lnc-NSUN6-2
Location (hg38): chr10:18654864-18659238
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 637 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000414939.1; RP11-139J15.2-004; OTTHUMT00000047082.1; NONHSAT011651
Alternative gene names: ENSG00000152487.5; RP11-139J15.2; OTTHUMG00000017766.1; ENSG00000152487.6; ARL5B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.4393 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSUN6-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSUN6-2:4
4.0 lnc-NSUN6-2:4
4.1 lnc-NSUN6-2:4
5.0 lnc-NSUN6-2:4
5.1 lnc-MPP7-115:5
5.2 lnc-NSUN6-2:4