Transcript: lnc-NSUN6-4:2

Basic information

LNCipedia transcript ID: lnc-NSUN6-4:2 
LNCipedia gene ID: lnc-NSUN6-4
Ensembl Gene ID: ENSG00000235020
Ensembl Transcript ID: ENST00000601195
Location (hg38): chr10:18260400-18261192
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 793 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT011638; ENST00000601195.1
Alternative gene names: ENSG00000235020.2; RP11-109I13.2; ENSG00000235020.4; AL390783.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4496 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSUN6-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSUN6-4:2
4.0 lnc-NSUN6-4:2
4.1 lnc-NSUN6-4:2
5.0 lnc-NSUN6-4:2
5.1 lnc-MPP7-118:2
5.2 lnc-NSUN6-4:2