Transcript: lnc-NSUN6-8:1

Basic information

LNCipedia transcript ID: lnc-NSUN6-8:1 
LNCipedia gene ID: lnc-NSUN6-8
Ensembl Gene ID: ENSG00000233968
Ensembl Transcript ID: ENST00000423551
Location (hg38): chr10:19721978-19728550
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 708 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423551.1; RP11-354E11.2-003; OTTHUMT00000047096.1; NONHSAT011668
Alternative gene names: ENSG00000233968.1; RP11-354E11.2; OTTHUMG00000017777.1; ENSG00000233968.2; ENSG00000233968.6; AL157895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6732 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSUN6-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEBL-2:2
4.0 lnc-NEBL-2:2
4.1 lnc-NEBL-2:2
5.0 lnc-NEBL-2:2
5.1 lnc-MPP7-112:1
5.2 lnc-NSUN6-8:1